phylokit-mcp

{
  "$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
  "name": "io.github.musharna/phylokit-mcp",
  "description": "Phylogenetic inference via IQ-TREE 3 — never returns a topology without its support",
  "title": "phylokit-mcp",
  "repository": {
    "url": "https://github.com/musharna/phylokit-mcp",
    "source": "github"
  },
  "version": "0.6.0",
  "websiteUrl": "https://github.com/musharna/phylokit-mcp",
  "packages": [
    {
      "registryType": "pypi",
      "registryBaseUrl": "https://pypi.org",
      "identifier": "phylokit-mcp",
      "version": "0.6.0",
      "runtimeHint": "uvx",
      "transport": {
        "type": "stdio"
      },
      "environmentVariables": [
        {
          "description": "Pinned so inference is reproducible; overriding it makes IQ-TREE runs non-deterministic.",
          "name": "OMP_NUM_THREADS"
        },
        {
          "description": "Pinned alongside OMP_NUM_THREADS for the same reproducibility reason.",
          "name": "MKL_NUM_THREADS"
        }
      ]
    }
  ],
  "_meta": {
    "io.modelcontextprotocol.registry/publisher-provided": {
      "tool": "manual",
      "version": "0.6.0"
    }
  }
}