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ENCODE Toolkit

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

ammawlaammawla/encode-toolkit★ 21Updated Mar 9, 2026

server.json

{
  "$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
  "name": "io.github.ammawla/encode-toolkit",
  "description": "20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines",
  "title": "ENCODE Toolkit",
  "repository": {
    "url": "https://github.com/ammawla/encode-toolkit",
    "source": "github"
  },
  "version": "0.3.0-beta.5",
  "packages": [
    {
      "registryType": "npm",
      "identifier": "encode-toolkit",
      "version": "0.3.0-beta.5",
      "transport": {
        "type": "stdio"
      }
    },
    {
      "registryType": "pypi",
      "identifier": "encode-toolkit",
      "version": "0.3.0b5",
      "transport": {
        "type": "stdio"
      }
    }
  ]
}

Permissions

DeclaredDetected
Runs code—nodepython
Installs—npm:encode-toolkit@0.3.0-beta.5pypi:encode-toolkit@0.3.0b5
Runs install scripts—None
NetworkNoneNone
Needs credentialsNoneNone
Outside the workspace—None
Agent tools—None

Checks

Low risk · Nothing worth a warning was found.

Not reviewed by a person · Checked by rules; the model review is not switched on yet.

Versions

  1. #10.3.0-beta.5latestOct 7, 2026